Please note: Reprints are provided for personal use only.

**submitted manuscripts**

- [PDF]
**Self-assembly of tessellated tissue sheets by growth and collision**

M. A. Heinrich, R. Alert, A. E. Wolf,**A. Košmrlj**, and D. J. Cohen,**bioRxiv**2021.05.06.442983 (2021) - [PDF]
**Linear Viscoelastic Properties of the Vertex Model for Epithelial Tissues**

S. Tong, N. K. Singh, R. Sknepnek, and**A. Košmrlj**,**arXiv:2102.11181**(2021) - [PDF]
**Liquid demixing in elastic networks: cavitation, permeation, or size selection?**

P. Ronceray, S. Mao,**A. Košmrlj**, and M. P. Haataja,**arXiv:2102.02787**(2021)

**2021**

- [PDF]
**Clonal dominance in excitable cell networks**

J. Imran Alsous, J. Rozman, R. Marmion,**A. Košmrlj**, and S. Y. Shvartsman,**Nature Physics**, in press - [PDF]
**Method of image charges for describing deformation of bounded two-dimensional solids with circular inclusions**

S. Sarkar, M. Čebron, M. Brojan, and**A. Košmrlj**,**Physical Review E**103, 053004 (2021) - [PDF]
**Elastic multipole method for describing deformation of infinite two-dimensional solids with circular inclusions**

S. Sarkar, M. Čebron, M. Brojan, and**A. Košmrlj**,**Physical Review E**103, 053003 (2021) - [PDF]
**Local accumulation of extracellular matrix regulates global morphogenetic patterning in the developing mammary gland**

B. A. Nerger, J. M. Jaslove, H. E. Elashal, S. Mao,**A. Košmrlj**, A. J. Link, and C. M. Nelson,**Current Biology**31, 1-15 (2021) - [PDF]
**Buckling of thermalized elastic sheets**

A. Morshedifard, M. Ruiz-Garcia, M. J. Abdolhosseini Qomi, and**A. Košmrlj**,**Journal of the Mechanics and Physics of Solids**149, 104296 (2021)

**2020**

- [PDF]
**Designing the Morphology of Separated Phases in Multicomponent Liquid Mixtures**

S. Mao, M. S. Chakraverti-Wuerthwein, H. Gaudio, and**A. Košmrlj**,**Physical Review Letters**125, 218003 (2020) [News] - [PDF]
**Size-dependent patterns of cell proliferation and migration in freely-expanding epithelia**

M. A. Heinrich, R. Alert, J. M. LaChance, T. J. Zajdel,**A. Košmrlj**, and D. J. Cohen,**eLife**9, e58945 (2020) - [PDF]
**Finite Temperature Phase Behavior of Viral Capsids as Oriented Particle Shells**

A. Singh,**A. Košmrlj**, and R. Bruinsma,**Physical Review Letters**124, 158101 (2020) - [PDF]
**Non-uniform growth and surface friction determine bacterial biofilm morphology on soft substrates**

C. Fei, S. Mao, J. Yan, R. Alert, H.A. Stone, B.L. Bassler, N.S. Wingreen, and**A. Košmrlj**,**Proceedings of the National Academy of Sciences of the United States of America**117 (14), 7622-7632 (2020) [News]

**2019**

- [PDF]
**Smooth muscle differentiation shapes domain branches during mouse lung development**

K. Goodwin, S. Mao, T. Guyomar, E. Miller, D. C. Radisky,**A. Košmrlj**, and C. M. Nelson,**Development**146, dev181172 (2019) - [PDF]
**Mechanical Instability and Interfacial Energy Jointly Drive Biofilm Morphogenesis**

J. Yan, C. Fei, S. Mao, A. Moreau, N. S. Wingreen,**A. Košmrlj**, H. A. Stone, and B. L. Bassler,**eLife**8, e43920 (2019) - [PDF]
**Phase behavior and morphology of multicomponent liquid mixtures**

S. Mao, D. Kuldinow, M. P. Haataja, and**A. Košmrlj**,**Soft Matter**15, 1297-1311 (2019)

**2018**

- [PDF]
**Heterogeneous Absorption of Antimicrobial Peptide LL37 in Escherichia coli Cells Enhances Population Survivability**

M. Snoussi, J. P. Talledo, N.-A. Del Rosario, S. Mohammadi, B.-Y. Ha,**A. Košmrlj**, and S. Taheri-Araghi,**eLife**7, e38174 (2018) [News1], [News2], [News3] - [PDF]
**Bacterial Biofilm Materials Properties Enable Removal and Transfer by Capillary Peeling**

J. Yan, A. Moreau, S. Khodaparast, A. Perazzo, J. Feng, C. Fei, S. Mao,**A. Košmrlj**, N. S. Wingreen, B. L. Bassler, and H. A. Stone,**Advanced Materials**30, 1804153 (2018) [News] - [PDF]
**Enhanced cellular uptake of LHRH-conjugated PEG-coated magnetite nanoparticles for specific targeting of triple negative breast cancer cells**

J. Hu, J. D. Obayemi, K. Malatesta,**A. Košmrlj**, and W. O. Soboyejo,**Materials Science and Engineering C**88, 32-45 (2018)

**2017**

- [PDF]
**Spontaneous formation of aligned DNA nanowires by capillarity-induced skin folding**

S. Nagashima, H.D. Ha, D.H. Kim,**A. Košmrlj**, H.A. Stone, and M.-W. Moon,**Proceedings of the National Academy of Sciences of the United States of America**114, 6233-6237 (2017) - [PDF]
**Non-Hookean statistical mechanics of clamped graphene ribbons**

M. J. Bowick,**A. Košmrlj**, D. R. Nelson and R. Sknepnek,**Physical Review B**95, 104109 (2017) - [PDF]
**Statistical Mechanics of Thin Spherical Shells**

**A. Košmrlj**, and D. R. Nelson,**Physical Review X**7, 011002 (2017)

**2016**

- [PDF]
**Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response**

S. Vedel, H. Nunns,**A. Košmrlj**, S. Semsey and A. Trusina,**Cell Systems**3, 187-198 (2016) - [PDF]
**Response of thermalized ribbons to pulling and bending**

**A. Košmrlj**, and D. R. Nelson,**Physical Review B**93, 125431 (2016)

**2015**

- [PDF]
**A monomer-trimer model supports intermittent glucagon fibril growth**

**A. Košmrlj**, P. Cordsen, A. Kyrsting, D. E. Otzen, L. B. Oddershede, and M. H. Jensen,**Scientific Reports**5, 9005 (2015)

**2014**

- [PDF]
**Complex ordered patterns in mechanical instability induced geometrically frustrated triangular cellular structures**

S. H. Kang, S. Shan,**A. Košmrlj**, W. L. Noorduin, S. Shian, J. C. Weaver, D. R. Clarke and K. Bertoldi,**Physical Review Letters**112, 098701 (2014) [News] - [PDF]
**Thermal excitations of warped membranes**

**A. Košmrlj**and D. R. Nelson,**Physical Review E**89, 022126 (2014)

**2013**

- [PDF]
**Harnessing instabilities for design of soft reconfigurable auxetic/chiral materials**

J. Shim, S. Shan,**A. Košmrlj**, S. H. Kang, E. R. Chen, J. C. Weaver and K. Bertoldi,**Soft Matter**9, 8198-8202 (2013) - [PDF]
**Mechanical properties of warped membranes**

**A. Košmrlj**and D. R. Nelson,**Physical Review E**88, 012136 (2013) - [PDF]
**Statistical Physics of T-Cell Development and Pathogen Specificity**

**A. Košmrlj**, M. Kardar and A. K. Chakraborty,**Annual Review of Condensed Matter Physics**4, 339-360 (2013)

**2012**

- [PDF]
**The Inﬂuence of T Cell Development on Pathogen Specificity and Autoreactivity**

**A. Košmrlj**, M. Kardar and A. K. Chakraborty,**Journal of Statistical Physics**149, 203-219 (2012)

**2011**

- [PDF]
**Continuum theory for cluster morphologies of soft colloids**

**A. Košmrlj**, G. J. Pauschenwein, G. Kahl and P. Ziherl,**Journal of Physical Chemistry B**115, 7206-7217 (2011) - [PDF]
**Thymic selection of T cells as diffusion with intermittent traps**

**A. Košmrlj**,**Journal of Statistical Physics**142, 1277-1286 (2011)

**2010**

- [PDF]
**Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection**

**A. Košmrlj**, E. L. Read, Y. Qi, T. M. Allen, M. Altfeld, S. G. Deeks, F. Pereyra, M. Carrington, B. D. Walker and A. K. Chakraborty,**Nature**465, 350-354 (2010) - [PDF]
**Statistical Mechanical Concepts in Immunology**

A. K. Chakraborty and**A. Košmrlj**,**Annual Review of Physical Chemistry**61, 283-303 (2010)

**2009**

- [PDF]
**How a protein searches for its site on DNA: the mechanism of facilitated diffusion**

L. Mirny, M. Slutsky, Z. Wunderlich, A. Tafvizi, J. Leith and**A. Košmrlj**,**Journal of Physics A: Mathematical and Theoretical**42, 434013 (2009) - [PDF]
**Thymic Selection of T-Cell Receptors as an Extreme Value Problem**

**A. Košmrlj**, A. K. Chakraborty, M. Kardar and E. I. Shakhnovich,**Physical Review Letters**103, 068103 (2009)

**2008**

- [PDF]
**How the thymus designs antigen-speciﬁc and self-tolerant T cell receptor sequences**

**A. Košmrlj**, A. K. Jha, E. S. Huseby, M. Kardar and A. K. Chakraborty,**Proceedings of the National Academy of Sciences of the United States of America**105, 16671-16676 (2008)

**2007**

- [PDF]
**Soft spheres make more mesophases**

M. A. Glaser, G. M. Grason, R. D. Kamien,**A. Košmrlj**, C. D. Santangelo and P. Ziherl,**Europhysics Letters**78, 46004 (2007)